STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100185985RNA binding protein fox-1 homolog 3 isoform X8. (448 aa)    
Predicted Functional Partners:
H2XJJ8_CIOIN
RRM domain-containing protein.
  
 
 0.865
F6Z0E6_CIOIN
KH domain-containing protein.
   
 
 0.671
F6QMU4_CIOIN
Uncharacterized protein.
  
 
 0.613
LOC100177894
Uncharacterized protein LOC100177894.
   
 
 0.556
F6R2J6_CIOIN
Uncharacterized protein.
  
 
 0.555
F6YF53_CIOIN
RRM domain-containing protein.
  
 
 
 0.550
rgc
RRM domain-containing protein.
  
 
 
 0.549
F6Z145_CIOIN
Uncharacterized protein.
  
 
 
 0.548
H2Y1H5_CIOIN
RRM domain-containing protein.
  
 
 
 0.548
H2XX28_CIOIN
RRM domain-containing protein.
  
 
 
 0.543
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.