zf(u1like)-11 protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

zf(u1like)-11

Matrin-type domain-containing protein. (640 aa)

Predicted Functional Partners:

LOC100182553

0.554

LOC100179085

0.505

H2XKK7_CIOIN

0.479

F6TN28_CIOIN

0.475

F7AB73_CIOIN

0.460

F6SBH8_CIOIN

0.439

F6UJ17_CIOIN

0.438

H2XJS9_CIOIN

0.438

H2Y2H0_CIOIN

0.438

F6XVF3_CIOIN

0.422

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SBH8_CIOIN	zf(u1like)-11	ENSCINP00000026339	ENSCINP00000025517	Uncharacterized protein.	Matrin-type domain-containing protein.	0.439
F6TN28_CIOIN	zf(u1like)-11	ENSCINP00000005817	ENSCINP00000025517	Uncharacterized protein; Belongs to the fructosamine kinase family.	Matrin-type domain-containing protein.	0.475
F6UJ17_CIOIN	H2XJS9_CIOIN	ENSCINP00000015421	ENSCINP00000029911	Uncharacterized protein.	Protein kinase domain-containing protein.	0.985
F6UJ17_CIOIN	H2Y2H0_CIOIN	ENSCINP00000015421	ENSCINP00000036105	Uncharacterized protein.	Protein kinase domain-containing protein.	0.997
F6UJ17_CIOIN	LOC100182553	ENSCINP00000015421	ENSCINP00000010860	Uncharacterized protein.	AP-2 complex subunit mu isoform X3; Belongs to the adaptor complexes medium subunit family.	0.850
F6UJ17_CIOIN	zf(u1like)-11	ENSCINP00000015421	ENSCINP00000025517	Uncharacterized protein.	Matrin-type domain-containing protein.	0.438
F6XVF3_CIOIN	zf(u1like)-11	ENSCINP00000010785	ENSCINP00000025517	Serine/threonine-protein phosphatase.	Matrin-type domain-containing protein.	0.422
F7AB73_CIOIN	zf(u1like)-11	ENSCINP00000009090	ENSCINP00000025517	Uncharacterized protein.	Matrin-type domain-containing protein.	0.460
H2XJS9_CIOIN	F6UJ17_CIOIN	ENSCINP00000029911	ENSCINP00000015421	Protein kinase domain-containing protein.	Uncharacterized protein.	0.985
H2XJS9_CIOIN	H2Y2H0_CIOIN	ENSCINP00000029911	ENSCINP00000036105	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.985
H2XJS9_CIOIN	LOC100182553	ENSCINP00000029911	ENSCINP00000010860	Protein kinase domain-containing protein.	AP-2 complex subunit mu isoform X3; Belongs to the adaptor complexes medium subunit family.	0.850
H2XJS9_CIOIN	zf(u1like)-11	ENSCINP00000029911	ENSCINP00000025517	Protein kinase domain-containing protein.	Matrin-type domain-containing protein.	0.438
H2XKK7_CIOIN	zf(u1like)-11	ENSCINP00000030189	ENSCINP00000025517	Uncharacterized protein.	Matrin-type domain-containing protein.	0.479
H2Y2H0_CIOIN	F6UJ17_CIOIN	ENSCINP00000036105	ENSCINP00000015421	Protein kinase domain-containing protein.	Uncharacterized protein.	0.997
H2Y2H0_CIOIN	H2XJS9_CIOIN	ENSCINP00000036105	ENSCINP00000029911	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.985
H2Y2H0_CIOIN	LOC100182553	ENSCINP00000036105	ENSCINP00000010860	Protein kinase domain-containing protein.	AP-2 complex subunit mu isoform X3; Belongs to the adaptor complexes medium subunit family.	0.850
H2Y2H0_CIOIN	zf(u1like)-11	ENSCINP00000036105	ENSCINP00000025517	Protein kinase domain-containing protein.	Matrin-type domain-containing protein.	0.438
LOC100179085	zf(u1like)-11	ENSCINP00000034525	ENSCINP00000025517	Enhancer of rudimentary homolog; May have a role in the cell cycle.	Matrin-type domain-containing protein.	0.505
LOC100182553	F6UJ17_CIOIN	ENSCINP00000010860	ENSCINP00000015421	AP-2 complex subunit mu isoform X3; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.850
LOC100182553	H2XJS9_CIOIN	ENSCINP00000010860	ENSCINP00000029911	AP-2 complex subunit mu isoform X3; Belongs to the adaptor complexes medium subunit family.	Protein kinase domain-containing protein.	0.850