STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6SQS1_CIOINSET domain-containing protein. (192 aa)    
Predicted Functional Partners:
F7AGV8_CIOIN
Uncharacterized protein.
     
 0.912
F6TG24_CIOIN
Fe2OG dioxygenase domain-containing protein.
    
  0.903
F6QH36_CIOIN
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
 
      0.788
LOC100184693
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
   0.737
F6WY47_CIOIN
WD_REPEATS_REGION domain-containing protein.
    
 0.688
F6RSF3_CIOIN
SET domain-containing protein.
      
 0.617
F6TF50_CIOIN
Uncharacterized protein.
   
 0.599
Ash2-like
B30.2/SPRY domain-containing protein.
    
 0.549
LOC104265886
Histone-binding protein RBBP4.
   
 0.549
F6UZR0_CIOIN
VEFS-Box domain-containing protein.
   
 0.548
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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