STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100181974WD repeat-containing protein 6-like. (158 aa)    
Predicted Functional Partners:
LOC100175025
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
   
 
 0.886
F7BQ53_CIOIN
WD_REPEATS_REGION domain-containing protein.
   
    0.724
F6QG58_CIOIN
FtsJ domain-containing protein.
   
 
 0.708
LOC100178209
Nop domain-containing protein.
   
    0.682
LOC100182620
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
    0.681
H2XWZ3_CIOIN
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
 
 0.641
F6X1E1_CIOIN
UPF0020 domain-containing protein.
   
 
 0.555
H2XVF8_CIOIN
Non-specific serine/threonine protein kinase.
   
 
  0.549
delta
Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.
      
 0.540
LOC100186454
Uncharacterized protein.
   
    0.530
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.