STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100178763Glyoxylate reductase/hydroxypyruvate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (324 aa)    
Predicted Functional Partners:
LOC100183164
Uncharacterized protein.
 
 
 0.966
LOC100181036
4-hydroxy-2-oxoglutarate aldolase, mitochondrial; Belongs to the DapA family.
  
 
 0.936
F6VZQ1_CIOIN
FMN hydroxy acid dehydrogenase domain-containing protein.
  
 
 0.935
F6SZD3_CIOIN
FMN hydroxy acid dehydrogenase domain-containing protein.
  
 
 0.935
F6Q7P2_CIOIN
Uncharacterized protein; Belongs to the HAD-like hydrolase superfamily.
  
 
 0.922
F6ZE91_CIOIN
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.
  
 0.915
LOC100178847
Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.845
LOC100178137
Uncharacterized protein LOC100178137.
  
 
 0.823
H2XNN8_CIOIN
PALP domain-containing protein.
  
 
 0.823
H2Y1I0_CIOIN
Amino_oxidase domain-containing protein.
   
 
 0.809
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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