STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6Y0W6_CIOINUncharacterized protein. (227 aa)    
Predicted Functional Partners:
H2Y061_CIOIN
GP-PDE domain-containing protein.
   
 
 0.912
H2Y2E8_CIOIN
Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.909
F6SGU7_CIOIN
Uncharacterized protein.
   
 
 0.907
LOC100179127
Phosphatidylserine synthase 1-like.
     
  0.900
LOC100178755
Transmembrane protein 189.
     
  0.900
F7B9K0_CIOIN
Uncharacterized protein; Belongs to the cytochrome P450 family.
    
  0.900
LOC100180225
Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.
     
  0.846
LOC100183857
Choline dehydrogenase.
     
  0.800
F6SDP7_CIOIN
EGF-like domain-containing protein.
  
 
 0.793
F7AAV2_CIOIN
EGF-like domain-containing protein.
  
 
 0.793
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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