STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6UNZ9_CIOINPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (77 aa)    
Predicted Functional Partners:
LOC100186181
rRNA 2'-O-methyltransferase fibrillarin.
   
 
 0.772
F6WWW4_CIOIN
WD_REPEATS_REGION domain-containing protein.
   
 
 0.667
LOC100186454
Uncharacterized protein.
   
 
 0.656
F6Y8C3_CIOIN
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
   0.629
LOC100183259
Uncharacterized protein.
   
 
 0.625
LOC100180054
U3 small nucleolar RNA-associated protein 4 homolog.
   
 
 0.620
F7BQ53_CIOIN
WD_REPEATS_REGION domain-containing protein.
   
 
 0.618
LOC100184042
Uncharacterized protein.
   
 
 0.606
LOC100175516
Uncharacterized protein.
   
 
 0.600
F6RKQ2_CIOIN
Uncharacterized protein.
    
 0.600
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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