STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100187103Tetraspanin. (228 aa)    
Predicted Functional Partners:
F6Y1X1_CIOIN
Uncharacterized protein; Belongs to the CD36 family.
     
 0.912
H2Y0S6_CIOIN
Uncharacterized protein.
 
      0.715
F6SWJ9_CIOIN
Uncharacterized protein.
   
 0.701
LOC104265386
Uncharacterized protein.
      
 0.642
F6VBT4_CIOIN
Uncharacterized protein.
   
 0.540
soxE
SoxE protein.
      
 0.424
F6XND0_CIOIN
Uncharacterized protein.
     
 0.424
H2Y1U8_CIOIN
Uncharacterized protein.
     
 0.424
F7BDH1_CIOIN
BRO1 domain-containing protein.
      
 0.414
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.