F6YB82_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F6YB82_CIOIN

Uncharacterized protein. (251 aa)

Predicted Functional Partners:

F6X986_CIOIN

0.917

F7AM07_CIOIN

0.852

F6SGH3_CIOIN

0.838

LOC100176319

0.838

H2XQH7_CIOIN

0.829

LOC100185146

0.729

LOC100175452

0.717

F6ZH30_CIOIN

0.691

LOC100178141

0.689

F6XF93_CIOIN

0.669

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SGH3_CIOIN	F6X986_CIOIN	ENSCINP00000000458	ENSCINP00000022203	RRM domain-containing protein.	RRM domain-containing protein.	0.873
F6SGH3_CIOIN	F6XF93_CIOIN	ENSCINP00000000458	ENSCINP00000016005	RRM domain-containing protein.	Uncharacterized protein.	0.876
F6SGH3_CIOIN	F6YB82_CIOIN	ENSCINP00000000458	ENSCINP00000026132	RRM domain-containing protein.	Uncharacterized protein.	0.838
F6SGH3_CIOIN	F6ZH30_CIOIN	ENSCINP00000000458	ENSCINP00000024217	RRM domain-containing protein.	RRM domain-containing protein.	0.678
F6SGH3_CIOIN	F7AM07_CIOIN	ENSCINP00000000458	ENSCINP00000008678	RRM domain-containing protein.	RRM domain-containing protein.	0.867
F6SGH3_CIOIN	H2XQH7_CIOIN	ENSCINP00000000458	ENSCINP00000031911	RRM domain-containing protein.	RRM domain-containing protein.	0.821
F6SGH3_CIOIN	LOC100175452	ENSCINP00000000458	ENSCINP00000007109	RRM domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.852
F6SGH3_CIOIN	LOC100178141	ENSCINP00000000458	ENSCINP00000012532	RRM domain-containing protein.	U1 small nuclear ribonucleoprotein 70 kDa-like.	0.756
F6SGH3_CIOIN	LOC100185146	ENSCINP00000000458	ENSCINP00000010079	RRM domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.868
F6X986_CIOIN	F6SGH3_CIOIN	ENSCINP00000022203	ENSCINP00000000458	RRM domain-containing protein.	RRM domain-containing protein.	0.873
F6X986_CIOIN	F6XF93_CIOIN	ENSCINP00000022203	ENSCINP00000016005	RRM domain-containing protein.	Uncharacterized protein.	0.945
F6X986_CIOIN	F6YB82_CIOIN	ENSCINP00000022203	ENSCINP00000026132	RRM domain-containing protein.	Uncharacterized protein.	0.917
F6X986_CIOIN	F6ZH30_CIOIN	ENSCINP00000022203	ENSCINP00000024217	RRM domain-containing protein.	RRM domain-containing protein.	0.933
F6X986_CIOIN	F7AM07_CIOIN	ENSCINP00000022203	ENSCINP00000008678	RRM domain-containing protein.	RRM domain-containing protein.	0.980
F6X986_CIOIN	H2XQH7_CIOIN	ENSCINP00000022203	ENSCINP00000031911	RRM domain-containing protein.	RRM domain-containing protein.	0.952
F6X986_CIOIN	LOC100175452	ENSCINP00000022203	ENSCINP00000007109	RRM domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.938
F6X986_CIOIN	LOC100176319	ENSCINP00000022203	ENSCINP00000015147	RRM domain-containing protein.	Serine/arginine-rich splicing factor 1B isoform X2.	0.873
F6X986_CIOIN	LOC100178141	ENSCINP00000022203	ENSCINP00000012532	RRM domain-containing protein.	U1 small nuclear ribonucleoprotein 70 kDa-like.	0.715
F6X986_CIOIN	LOC100185146	ENSCINP00000022203	ENSCINP00000010079	RRM domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.961
F6XF93_CIOIN	F6SGH3_CIOIN	ENSCINP00000016005	ENSCINP00000000458	Uncharacterized protein.	RRM domain-containing protein.	0.876