STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6XLS2_CIOINUncharacterized protein. (745 aa)    
Predicted Functional Partners:
LOC100178414
Uncharacterized protein LOC100178414.
    
 
 0.879
LOC100177730
Uncharacterized protein.
    
 
 0.877
LOC100177878
Cerebral cavernous malformations protein 2 homolog.
    
 
 0.859
Rap1b
Uncharacterized protein.
    
 
 0.781
LOC100176205
Programmed cell death protein 10.
    
 
 0.658
H2XU17_CIOIN
Longin domain-containing protein.
      
 0.479
LOC100176155
Uncharacterized protein.
    
 
0.451
F6YR85_CIOIN
Uncharacterized protein.
      
 0.440
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.