STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100181037MR_MLE domain-containing protein. (445 aa)    
Predicted Functional Partners:
H2XTW6_CIOIN
Uncharacterized protein; Belongs to the DapA family.
 
    
 0.677
F6WUP4_CIOIN
Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.619
LOC100181968
TP_methylase domain-containing protein.
      
 0.569
F6YM31_CIOIN
TYR_PHOSPHATASE_2 domain-containing protein.
      
 0.534
F6TXZ8_CIOIN
Uncharacterized protein.
   
 0.529
LOC100176155
Uncharacterized protein.
    
 0.494
ci-arfgap-3
Zinc finger protein Ci-ArfGAP-3.
    
 
 0.480
F7BGY7_CIOIN
Uncharacterized protein.
    
 
 0.476
F6Y9W9_CIOIN
Uncharacterized protein.
   
 0.463
F6Q5K0_CIOIN
Uncharacterized protein.
   
 0.463
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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