STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6VMK4_CIOINBTB domain-containing protein. (147 aa)    
Predicted Functional Partners:
LOC778757
BZIP domain-containing protein.
    
 0.765
LOC100184384
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
 
 0.611
LOC778664
Transcription factor protein.
    
 0.603
F6R2H3_CIOIN
Uncharacterized protein.
    
  0.560
H2XR16_CIOIN
F-box domain-containing protein.
    
  0.560
LOC100184417
Exportin-1.
    
  0.555
F6S4F7_CIOIN
Non-specific serine/threonine protein kinase.
    
 0.545
F6R7T5_CIOIN
Uncharacterized protein.
    
 0.522
F6S5U6_CIOIN
BACK domain-containing protein.
  
 
 0.522
F7AMX9_CIOIN
BTB domain-containing protein.
  
 
 0.514
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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