STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6VM15_CIOINRanBP2-type domain-containing protein. (339 aa)    
Predicted Functional Partners:
Q1RPY5_CIOIN
Zinc finger protein.
    
 0.960
F6SYE0_CIOIN
Protein kinase domain-containing protein.
    
 0.905
LOC100179989
PPM-type phosphatase domain-containing protein.
    
 0.890
Tak1/mapkkk7
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.884
H2Y0N7_CIOIN
Pkinase_Tyr domain-containing protein.
   
 0.884
r27a
R27a protein isoform X1.
    
 0.872
Q4H3C1_CIOIN
IkappaB kinase.
    
 0.836
F6ZJN8_CIOIN
Uncharacterized protein.
    
  0.803
F6TER2_CIOIN
Protein kinase domain-containing protein.
   
 0.797
F7B012_CIOIN
UBIQUITIN_CONJUGAT_2 domain-containing protein.
     
 0.783
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.