STRINGSTRING
VPS41 protein (Ciona intestinalis) - STRING interaction network
"VPS41" - Zinc finger protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS41Zinc finger protein (841 aa)    
Predicted Functional Partners:
ENSCING00000001526
Uncharacterized protein (863 aa)
     
  0.987
vps16
Uncharacterized protein (844 aa)
     
  0.986
ENSCING00000021626
Uncharacterized protein (598 aa)
     
  0.974
ENSCING00000012212
Uncharacterized protein (626 aa)
     
  0.974
ENSCING00000006468
Uncharacterized protein (871 aa)
     
  0.961
ENSCING00000003974
Uncharacterized protein (351 aa)
     
  0.946
ENSCING00000025123
Uncharacterized protein (116 aa)
     
  0.929
ENSCING00000005603
Uncharacterized protein (856 aa)
     
0.899
ENSCING00000024385
Uncharacterized protein (563 aa)
     
  0.888
ENSCING00000002400
Uncharacterized protein (588 aa)
     
  0.856
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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