STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zf(ring)-20Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family. (841 aa)    
Predicted Functional Partners:
LOC100185122
Uncharacterized protein.
    
 0.997
F6SZ37_CIOIN
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
    
 0.997
F6Q2U2_CIOIN
CNH domain-containing protein.
   
 0.994
F7BBV8_CIOIN
CNH domain-containing protein.
   
0.989
F6YU56_CIOIN
Uncharacterized protein.
   
 0.956
H2XX14_CIOIN
Uncharacterized protein.
   
 0.956
LOC100178332
Ras-related protein Rab-9B-like.
    
 
 0.951
H2XPJ6_CIOIN
Uncharacterized protein.
  
 
 
 0.945
F6SQH1_CIOIN
Uncharacterized protein.
    
   0.934
F6Y3Y3_CIOIN
Uncharacterized protein.
    
   0.934
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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