STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F7BGY2_CIOIN3Beta_HSD domain-containing protein. (273 aa)    
Predicted Functional Partners:
LOC100180815
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.866
LOC100180521
3-keto-steroid reductase-like.
   
 0.851
LOC100175543
Lathosterol oxidase-like; Belongs to the sterol desaturase family.
   
 0.817
F6Z833_CIOIN
Uncharacterized protein.
   
 
 0.800
F6RFK8_CIOIN
Methyltransf_11 domain-containing protein.
    
 0.783
LOC100183027
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.685
F6PNS6_CIOIN
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
   
 0.663
LOC100176033
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
 0.659
LOC100183019
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
  0.655
LOC100185869
40S ribosomal protein S11-like.
   
 0.653
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.