F7BGB4_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F7BGB4_CIOIN

Uncharacterized protein. (97 aa)

Predicted Functional Partners:

LOC100182843

0.518

LOC100181871

0.511

F6WIL6_CIOIN

0.506

F6S1D4_CIOIN

0.502

F6WRK8_CIOIN

0.492

F6ZJZ6_CIOIN

0.490

F6ZE98_CIOIN

0.489

LOC100187279

0.475

F6UXZ8_CIOIN

0.474

F7AB73_CIOIN

0.460

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6S1D4_CIOIN	F6WIL6_CIOIN	ENSCINP00000022092	ENSCINP00000015652	Gamma-tubulin complex component.	Gamma-tubulin complex component.	0.998
F6S1D4_CIOIN	F6ZJZ6_CIOIN	ENSCINP00000022092	ENSCINP00000015580	Gamma-tubulin complex component.	Uncharacterized protein.	0.618
F6S1D4_CIOIN	F7BGB4_CIOIN	ENSCINP00000022092	ENSCINP00000026671	Gamma-tubulin complex component.	Uncharacterized protein.	0.502
F6S1D4_CIOIN	LOC100187279	ENSCINP00000022092	ENSCINP00000032060	Gamma-tubulin complex component.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.998
F6UXZ8_CIOIN	F7BGB4_CIOIN	ENSCINP00000021702	ENSCINP00000026671	BHLH domain-containing protein.	Uncharacterized protein.	0.474
F6WIL6_CIOIN	F6S1D4_CIOIN	ENSCINP00000015652	ENSCINP00000022092	Gamma-tubulin complex component.	Gamma-tubulin complex component.	0.998
F6WIL6_CIOIN	F6ZJZ6_CIOIN	ENSCINP00000015652	ENSCINP00000015580	Gamma-tubulin complex component.	Uncharacterized protein.	0.510
F6WIL6_CIOIN	F7BGB4_CIOIN	ENSCINP00000015652	ENSCINP00000026671	Gamma-tubulin complex component.	Uncharacterized protein.	0.506
F6WIL6_CIOIN	LOC100187279	ENSCINP00000015652	ENSCINP00000032060	Gamma-tubulin complex component.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.998
F6WRK8_CIOIN	F7BGB4_CIOIN	ENSCINP00000004338	ENSCINP00000026671	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.492
F6ZE98_CIOIN	F7BGB4_CIOIN	ENSCINP00000012805	ENSCINP00000026671	Uncharacterized protein.	Uncharacterized protein.	0.489
F6ZJZ6_CIOIN	F6S1D4_CIOIN	ENSCINP00000015580	ENSCINP00000022092	Uncharacterized protein.	Gamma-tubulin complex component.	0.618
F6ZJZ6_CIOIN	F6WIL6_CIOIN	ENSCINP00000015580	ENSCINP00000015652	Uncharacterized protein.	Gamma-tubulin complex component.	0.510
F6ZJZ6_CIOIN	F7BGB4_CIOIN	ENSCINP00000015580	ENSCINP00000026671	Uncharacterized protein.	Uncharacterized protein.	0.490
F6ZJZ6_CIOIN	LOC100187279	ENSCINP00000015580	ENSCINP00000032060	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.557
F7AB73_CIOIN	F7BGB4_CIOIN	ENSCINP00000009090	ENSCINP00000026671	Uncharacterized protein.	Uncharacterized protein.	0.460
F7BGB4_CIOIN	F6S1D4_CIOIN	ENSCINP00000026671	ENSCINP00000022092	Uncharacterized protein.	Gamma-tubulin complex component.	0.502
F7BGB4_CIOIN	F6UXZ8_CIOIN	ENSCINP00000026671	ENSCINP00000021702	Uncharacterized protein.	BHLH domain-containing protein.	0.474
F7BGB4_CIOIN	F6WIL6_CIOIN	ENSCINP00000026671	ENSCINP00000015652	Uncharacterized protein.	Gamma-tubulin complex component.	0.506
F7BGB4_CIOIN	F6WRK8_CIOIN	ENSCINP00000026671	ENSCINP00000004338	Uncharacterized protein.	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.492