STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6SVB2_CIOINAcetyltransf_13 domain-containing protein. (196 aa)    
Predicted Functional Partners:
F6WUJ1_CIOIN
Structural maintenance of chromosomes protein.
   
 0.981
LOC100180856
Rad21_Rec8 domain-containing protein.
   
 0.904
LOC100175748
SCD domain-containing protein.
   
 0.868
F7ADN1_CIOIN
Structural maintenance of chromosomes protein.
   
 0.861
F6ZXH6_CIOIN
Uncharacterized protein.
    
 0.850
F6YGM0_CIOIN
Uncharacterized protein.
    
 0.845
LOC100184693
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.843
LOC100181789
AAA_23 domain-containing protein.
   
 0.837
LOC100176076
Uncharacterized protein LOC100176076.
   
 0.826
LOC100180482
Structural maintenance of chromosomes protein.
   
 0.823
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.