STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100178900E3 ubiquitin-protein ligase PPP1R11-like. (112 aa)    
Predicted Functional Partners:
LOC100183890
Leucine-rich repeat transmembrane neuronal protein 1-like.
   
 
 0.624
H2XZQ0_CIOIN
Uncharacterized protein.
   
 
 0.624
F6SW03_CIOIN
Uncharacterized protein.
   
 
 0.622
F6Q5E4_CIOIN
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 
 0.512
mech2
Mech2 protein.
    
 
 0.512
LOC100178587
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 
 0.512
F6VI59_CIOIN
SER_THR_PHOSPHATASE domain-containing protein.
    
 
 0.512
H2XJI0_CIOIN
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 
 0.512
F6XVF3_CIOIN
Serine/threonine-protein phosphatase.
    
 
 0.508
F7AR48_CIOIN
Uncharacterized protein.
   
 
 0.443
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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