STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6T6V3_CIOINNucleolar protein 6. (234 aa)    
Predicted Functional Partners:
LOC100183259
Uncharacterized protein.
   
 0.993
F6UDJ0_CIOIN
Uncharacterized protein.
   
 0.991
LOC100186454
Uncharacterized protein.
   
 0.991
F6WWW4_CIOIN
WD_REPEATS_REGION domain-containing protein.
   
 0.987
LOC100180269
Uncharacterized protein.
   
 0.986
LOC100180054
U3 small nucleolar RNA-associated protein 4 homolog.
   
 0.984
F6QDE3_CIOIN
Bms1-type G domain-containing protein.
   
 0.983
LOC100184042
Uncharacterized protein.
   
 0.983
LOC100178939
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.
   
 0.979
LOC100186181
rRNA 2'-O-methyltransferase fibrillarin.
   
 0.977
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.