STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100182244Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (438 aa)    
Predicted Functional Partners:
LOC100180531
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
   
 0.893
LOC100182982
Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.
     
 0.750
H2XWZ5_CIOIN
Uncharacterized protein.
     
 0.739
F6WFB4_CIOIN
Uncharacterized protein.
    
 0.735
H2XKU8_CIOIN
Sulfotransferase; Belongs to the sulfotransferase 1 family.
     
 0.716
F6RJU6_CIOIN
Uncharacterized protein.
     
 0.680
Collagen_XVIII
Endostatin domain-containing protein.
    
 
 0.669
F6S4M7_CIOIN
Uncharacterized protein.
    
 0.655
F6Q0W6_CIOIN
Uncharacterized protein; Belongs to the glycosyltransferase 47 family.
     
 0.649
H2XW04_CIOIN
Uncharacterized protein; Belongs to the glycosyltransferase 47 family.
   
 
 0.624
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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