STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100178669Uncharacterized protein. (216 aa)    
Predicted Functional Partners:
F6WGS7_CIOIN
Uncharacterized protein.
      
 0.476
LOC100184971
RING finger protein 24.
      
 0.476
H2XVM9_CIOIN
Uncharacterized protein.
      
 0.474
LOC100184659
AMPKBI domain-containing protein.
      
 0.473
LOC100179626
Mannose-6-phosphate isomerase-like.
   
  
 0.467
LOC100177698
Adenosine 3'-phospho 5'-phosphosulfate transporter 1-like.
   
  
 0.457
F6PYT8_CIOIN
Uncharacterized protein.
   
  
 0.453
LOC100175466
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
      
 0.453
LOC100181275
TPT domain-containing protein.
   
  
 0.442
F7B397_CIOIN
Uncharacterized protein.
   
 
 0.427
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.