STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6W3X7_CIOINANK_REP_REGION domain-containing protein. (509 aa)    
Predicted Functional Partners:
r27a
R27a protein isoform X1.
    
 0.722
LOC100185384
ubiquitin-60S ribosomal protein L40.
    
 0.703
ikk-epsilon
ikappaB kinase isoform X1.
   
 0.675
Q4H3C1_CIOIN
IkappaB kinase.
   
 0.675
zf(an1)-3
AN1-type domain-containing protein.
   
 0.667
F6YNL7_CIOIN
Ubiquitin-like domain-containing protein.
   
 0.667
F6YYK3_CIOIN
Uncharacterized protein.
    
 
 0.610
LOC100184944
Centromere protein I-like isoform X1.
   
 0.575
LOC100180815
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.571
F6VA41_CIOIN
ANK_REP_REGION domain-containing protein.
  
 0.566
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.