STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113475151Uncharacterized protein. (169 aa)    
Predicted Functional Partners:
F6VMS4_CIOIN
Uncharacterized protein.
   
 
 0.690
F7BGT4_CIOIN
E3 ubiquitin-protein ligase.
    
 
 0.635
F6PPP8_CIOIN
E3 ubiquitin-protein ligase.
    
 
 0.626
LOC101242403
Uncharacterized protein LOC101242403 isoform X1.
   
  
 0.544
LOC100179441
Uncharacterized protein.
      
 0.535
F6WRI9_CIOIN
HECT domain-containing protein.
      
 0.530
H2XLP4_CIOIN
Uncharacterized protein.
      
 0.530
H2XPT0_CIOIN
Uncharacterized protein.
      
 0.530
F6XNK4_CIOIN
Uncharacterized protein.
      
 0.473
F6W446_CIOIN
E3 ubiquitin-protein ligase.
    
 
 0.453
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.