STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6QU62_CIOINJ domain-containing protein. (430 aa)    
Predicted Functional Partners:
F6U113_CIOIN
Uncharacterized protein.
 
 0.745
hsp70
Uncharacterized protein; Belongs to the heat shock protein 70 family.
 
 0.744
H2XU53_CIOIN
Uncharacterized protein; Belongs to the heat shock protein 70 family.
 
 0.744
LOC100187210
Uncharacterized protein; Belongs to the heat shock protein 70 family.
 
 0.742
LOC100186609
Uncharacterized protein; Belongs to the heat shock protein 70 family.
 
 0.715
LOC101242470
Uncharacterized protein; Belongs to the heat shock protein 70 family.
 
 0.710
H2XQ03_CIOIN
Uncharacterized protein.
 
 0.653
hspa12a
Uncharacterized protein.
  
 0.615
LOC100178583
Tyrosine--tRNA ligase.
     
 0.611
LOC100181469
Uncharacterized protein LOC100181469 isoform X2.
  
 0.609
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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