STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zf(ring)-23RING-type domain-containing protein. (319 aa)    
Predicted Functional Partners:
r27a
R27a protein isoform X1.
   
  0.892
LOC100184240
Ubiquitin-conjugating enzyme E2 35-like isoform X2; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.889
F6ZJN8_CIOIN
Uncharacterized protein.
    
  0.857
LOC100185384
ubiquitin-60S ribosomal protein L40.
    
 0.834
F6YGJ7_CIOIN
Uncharacterized protein; Belongs to the peptidase C19 family.
    
 
 0.749
F7B012_CIOIN
UBIQUITIN_CONJUGAT_2 domain-containing protein.
     
 0.724
F6QH43_CIOIN
RING-type domain-containing protein.
    
 0.706
pias
Uncharacterized protein.
     
 0.670
F6VJQ1_CIOIN
Uncharacterized protein.
    
  0.667
LOC100177452
Uncharacterized protein.
     
 0.651
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.