STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC10894927860S ribosomal protein L22-like isoform X1. (131 aa)    
Predicted Functional Partners:
LOC100180815
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.998
LOC100175749
60S ribosomal protein L26.
   
 0.987
H2XKP6_CIOIN
Ribosomal_L14e domain-containing protein.
   
 0.986
LOC108951018
60S ribosomal protein L21-like isoform X3.
   
 0.985
LOC100180716
60S ribosomal protein L31.
   
 0.984
LOC100186399
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
   
 0.984
rl32
Uncharacterized protein.
   
 0.984
F6Y6X7_CIOIN
Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.
   
 0.983
LOC100186361
60S ribosomal protein L6.
   
 0.982
LOC100176316
60S ribosomal protein L23a-like; Belongs to the universal ribosomal protein uL23 family.
   
 0.982
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.