STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XKA1_CIOINSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (90 aa)    
Predicted Functional Partners:
LOC100178781
Small nuclear ribonucleoprotein-associated protein B-like.
   
 0.999
H2XW02_CIOIN
Small nuclear ribonucleoprotein Sm D2.
   
 0.999
H2XZL8_CIOIN
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.999
LOC100175824
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.998
LOC100180259
U2 small nuclear ribonucleoprotein A'-like.
   
 0.998
F6Y8Y8_CIOIN
Uncharacterized protein.
   
 0.997
LOC100178141
U1 small nuclear ribonucleoprotein 70 kDa-like.
   
 0.996
LOC100176856
Uncharacterized protein.
   
 0.996
H2Y233_CIOIN
Nuclear cap-binding protein subunit 2.
   
 0.995
LOC100176960
Uncharacterized protein.
   
 0.993
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.