STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XKB6_CIOINDUF4200 domain-containing protein. (239 aa)    
Predicted Functional Partners:
LOC100180904
Polycomb protein eed.
    
 0.512
F6TF50_CIOIN
Uncharacterized protein.
    
 0.501
F6UZR0_CIOIN
VEFS-Box domain-containing protein.
    
 0.500
LOC104265886
Histone-binding protein RBBP4.
    
 0.491
F6WY47_CIOIN
WD_REPEATS_REGION domain-containing protein.
    
 0.474
Ash2-like
B30.2/SPRY domain-containing protein.
    
 0.473
p53/p73-a
Transcription factor protein.
    
 0.469
P53/p73-b
Uncharacterized protein.
    
 0.469
LOC100184966
Histone H2B-like; Belongs to the histone H2B family.
    
 0.448
F7BLS5_CIOIN
PCI domain-containing protein.
    
 0.425
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.