STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XKK1_CIOINUncharacterized protein. (267 aa)    
Predicted Functional Partners:
F6YDP2_CIOIN
Uncharacterized protein.
    
 0.881
H2Y2P8_CIOIN
UBA domain-containing protein.
    
 0.881
F7B1W3_CIOIN
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
      
 0.624
LOC100186064
Serine/threonine-protein phosphatase.
    
  0.610
Raf1
Uncharacterized protein.
    
 0.594
H2XK39_CIOIN
Protein kinase domain-containing protein.
    
 0.594
LOC100182493
Growth factor receptor-bound protein 2-like isoform X1.
    
 0.555
LOC100183719
Uncharacterized protein.
    
 0.555
H2XX13_CIOIN
SH2 domain-containing protein.
    
 0.555
H2Y004_CIOIN
PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
      
 0.537
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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