STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XKK2_CIOINEloA-BP1 domain-containing protein. (506 aa)    
Predicted Functional Partners:
F6YN32_CIOIN
Exonuclease domain-containing protein.
 
     0.922
F6SEU1_CIOIN
Pan3_PK domain-containing protein.
    
 0.699
LOC100184693
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
 0.687
LOC494392
Uncharacterized protein LOC494392.
    
 
 0.486
LOC100182618
Ipi1_N domain-containing protein.
   
 
  0.474
LOC100178583
Tyrosine--tRNA ligase.
  
  
 0.457
LOC100176897
Uncharacterized protein.
   
 
 0.443
LOC101242128
Uncharacterized protein.
   
 0.410
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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