STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XLT2_CIOINUncharacterized protein. (172 aa)    
Predicted Functional Partners:
LOC100177272
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.864
F6QR00_CIOIN
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.835
H2XSM0_CIOIN
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
    
 
 0.781
LOC100183246
RAI1 domain-containing protein.
    
 
 0.775
H2XKX7_CIOIN
CID domain-containing protein.
    
 0.612
H2XST8_CIOIN
Uncharacterized protein.
    
 0.611
LOC100187321
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
    
 0.601
F6XIG6_CIOIN
RPOL4c domain-containing protein.
    
  0.593
LOC100177778
DNA-directed RNA polymerase II subunit RPB7.
    
  0.586
H2XJG6_CIOIN
Uncharacterized protein.
    
  0.569
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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