STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XLW5_CIOINDilute domain-containing protein. (191 aa)    
Predicted Functional Partners:
F6TA08_CIOIN
Ras-associating domain-containing protein.
 
     0.920
H2XSQ5_CIOIN
Uncharacterized protein.
    
 0.631
F6UHN5_CIOIN
ZU5 domain-containing protein.
   
 
 0.620
LOC100175475
Uncharacterized protein LOC100175475 isoform X2.
    
 0.569
F6YAH3_CIOIN
Uncharacterized protein.
    
 
 0.538
LOC100185663
Vinculin.
    
 
 0.524
LOC100185283
Ras-related protein O-RAL isoform X2.
    
 
 0.522
Rap1b
Uncharacterized protein.
    
 
 0.516
F6YND7_CIOIN
PDZ domain-containing protein.
   
 
 0.478
rhoc
RhoA protein.
    
 
 0.446
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.