H2XLY5_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2XLY5_CIOIN

DMPK_coil domain-containing protein. (189 aa)

Predicted Functional Partners:

H2XY43_CIOIN

0.925

H2XVI5_CIOIN

0.920

H2XPF3_CIOIN

0.868

F6QZH0_CIOIN

0.862

F6Q0M2_CIOIN

0.794

F6Z0T1_CIOIN

0.733

F6WVT9_CIOIN

0.725

rhoc

0.717

rhob

0.666

H2XXD3_CIOIN

0.663

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6Q0M2_CIOIN	H2XLY5_CIOIN	ENSCINP00000009532	ENSCINP00000030667	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	DMPK_coil domain-containing protein.	0.794
F6Q0M2_CIOIN	H2XY43_CIOIN	ENSCINP00000009532	ENSCINP00000034577	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.850
F6QZH0_CIOIN	H2XLY5_CIOIN	ENSCINP00000016849	ENSCINP00000030667	Protein kinase domain-containing protein.	DMPK_coil domain-containing protein.	0.862
F6QZH0_CIOIN	H2XY43_CIOIN	ENSCINP00000016849	ENSCINP00000034577	Protein kinase domain-containing protein.	Uncharacterized protein.	0.888
F6QZH0_CIOIN	rhob	ENSCINP00000016849	ENSCINP00000023349	Protein kinase domain-containing protein.	Rif protein.	0.501
F6QZH0_CIOIN	rhoc	ENSCINP00000016849	ENSCINP00000006386	Protein kinase domain-containing protein.	RhoA protein.	0.538
F6WVT9_CIOIN	H2XLY5_CIOIN	ENSCINP00000014529	ENSCINP00000030667	Protein kinase domain-containing protein.	DMPK_coil domain-containing protein.	0.725
F6WVT9_CIOIN	H2XY43_CIOIN	ENSCINP00000014529	ENSCINP00000034577	Protein kinase domain-containing protein.	Uncharacterized protein.	0.667
F6WVT9_CIOIN	rhob	ENSCINP00000014529	ENSCINP00000023349	Protein kinase domain-containing protein.	Rif protein.	0.501
F6WVT9_CIOIN	rhoc	ENSCINP00000014529	ENSCINP00000006386	Protein kinase domain-containing protein.	RhoA protein.	0.538
F6Z0T1_CIOIN	H2XLY5_CIOIN	ENSCINP00000008420	ENSCINP00000030667	Uncharacterized protein.	DMPK_coil domain-containing protein.	0.733
F6Z0T1_CIOIN	H2XY43_CIOIN	ENSCINP00000008420	ENSCINP00000034577	Uncharacterized protein.	Uncharacterized protein.	0.902
H2XLY5_CIOIN	F6Q0M2_CIOIN	ENSCINP00000030667	ENSCINP00000009532	DMPK_coil domain-containing protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.794
H2XLY5_CIOIN	F6QZH0_CIOIN	ENSCINP00000030667	ENSCINP00000016849	DMPK_coil domain-containing protein.	Protein kinase domain-containing protein.	0.862
H2XLY5_CIOIN	F6WVT9_CIOIN	ENSCINP00000030667	ENSCINP00000014529	DMPK_coil domain-containing protein.	Protein kinase domain-containing protein.	0.725
H2XLY5_CIOIN	F6Z0T1_CIOIN	ENSCINP00000030667	ENSCINP00000008420	DMPK_coil domain-containing protein.	Uncharacterized protein.	0.733
H2XLY5_CIOIN	H2XPF3_CIOIN	ENSCINP00000030667	ENSCINP00000031536	DMPK_coil domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.868
H2XLY5_CIOIN	H2XVI5_CIOIN	ENSCINP00000030667	ENSCINP00000033669	DMPK_coil domain-containing protein.	AGC-kinase C-terminal domain-containing protein.	0.920
H2XLY5_CIOIN	H2XXD3_CIOIN	ENSCINP00000030667	ENSCINP00000034317	DMPK_coil domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.663
H2XLY5_CIOIN	H2XY43_CIOIN	ENSCINP00000030667	ENSCINP00000034577	DMPK_coil domain-containing protein.	Uncharacterized protein.	0.925