STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XLZ0_CIOINRING-type domain-containing protein. (223 aa)    
Predicted Functional Partners:
LOC113474371
RanBP2-type domain-containing protein.
    
 0.832
H2XLG0_CIOIN
RING-type domain-containing protein.
  
 
0.799
F6WQW9_CIOIN
Uncharacterized protein.
   
 0.795
LOC100180904
Polycomb protein eed.
    
 0.770
F6UZR0_CIOIN
VEFS-Box domain-containing protein.
   
 0.754
LOC100185252
Chloride channel protein.
 
    
 0.753
LOC104265886
Histone-binding protein RBBP4.
     
 0.712
F6ZZ26_CIOIN
RING-type domain-containing protein.
  
 
0.689
ck2b
Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.
    
 0.673
F6RG85_CIOIN
RING-type domain-containing protein.
  
 
0.672
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (28%) [HD]