STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XMB6_CIOINUBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (163 aa)    
Predicted Functional Partners:
F6PK54_CIOIN
Uncharacterized protein.
   
 0.998
LOC100178367
Small ubiquitin-related modifier.
   
 0.998
H2XM91_CIOIN
SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.
   
 0.996
L7N0T0_CIOIN
RanBD1 domain-containing protein.
   
 0.994
pias
Uncharacterized protein.
    
 0.980
F6Z8N3_CIOIN
ThiF domain-containing protein.
  
 0.976
LOC100184693
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.952
F6W9U2_CIOIN
Rad60-SLD domain-containing protein.
   
 0.943
tardbp
Ci-Tardbp protein.
   
  0.938
pias-like
Zinc finger protein.
    
 0.936
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.