STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100180975AP-3 complex subunit sigma-2 isoform X1. (189 aa)    
Predicted Functional Partners:
LOC100181883
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
   
 0.997
LOC100179714
AP-3 complex subunit mu-1-like; Belongs to the adaptor complexes medium subunit family.
   
 0.992
F6T2N7_CIOIN
Adaptin_N domain-containing protein.
    
 0.990
F6UJ17_CIOIN
Uncharacterized protein.
    
 0.964
H2XJS9_CIOIN
Protein kinase domain-containing protein.
    
 0.964
H2Y2H0_CIOIN
Protein kinase domain-containing protein.
    
 0.964
F6T2R5_CIOIN
AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.
    
 0.940
LOC100176522
AP-1 complex subunit gamma.
    
 0.924
LOC100186345
60S ribosomal protein L7a.
 
    
 0.904
LOC104265915
Adaptin_N domain-containing protein.
    
 0.885
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.