STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XMG3_CIOINUncharacterized protein. (179 aa)    
Predicted Functional Partners:
F7BKE7_CIOIN
Uncharacterized protein.
 
      0.900
F7BKD0_CIOIN
MT domain-containing protein.
 
      0.900
H2XUV8_CIOIN
Uncharacterized protein.
 
      0.900
H2Y3B9_CIOIN
AAA_6 domain-containing protein.
 
      0.900
F7A1G4_CIOIN
AAA_6 domain-containing protein.
 
      0.892
H2XQ18_CIOIN
Uncharacterized protein.
 
      0.859
F6UZT3_CIOIN
Uncharacterized protein.
 
 
    0.783
F6TKP9_CIOIN
Uncharacterized protein.
 
      0.773
F7B690_CIOIN
CAP-Gly domain-containing protein.
   
 0.520
LOC100180225
Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.
    
 0.507
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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