STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XN51_CIOINUncharacterized protein. (2009 aa)    
Predicted Functional Partners:
LOC100181746
MAGUK p55 subfamily member 7 isoform X1; Belongs to the MAGUK family.
    
 0.900
F6PPJ1_CIOIN
Protein kinase C.
    
 0.702
LOC100175009
Partitioning defective protein 6.
    
 0.629
LOC100185384
ubiquitin-60S ribosomal protein L40.
    
 0.584
F6W2N4_CIOIN
Uncharacterized protein.
   
 0.576
F6R9A6_CIOIN
Uncharacterized protein.
   
 0.576
r27a
R27a protein isoform X1.
    
  0.574
LOC100185660
Phosphoinositide phospholipase C.
   
 
 0.554
F6ZK74_CIOIN
Phosphoinositide phospholipase C.
   
 
 0.554
LOC100177777
Phosphoinositide phospholipase C.
   
 
 0.554
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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