STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100178512Mesencephalic astrocyte-derived neurotrophic factor homolog. (178 aa)    
Predicted Functional Partners:
LOC100186609
Uncharacterized protein; Belongs to the heat shock protein 70 family.
   
 
 0.888
LOC101242470
Uncharacterized protein; Belongs to the heat shock protein 70 family.
   
 
 0.888
LOC100187478
dnaJ homolog subfamily B member 11-like.
   
 
 0.857
LOC100184240
Ubiquitin-conjugating enzyme E2 35-like isoform X2; Belongs to the ubiquitin-conjugating enzyme family.
 
      0.844
LOC100175624
Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family.
 
      0.722
LOC101243120
B-cell receptor-associated protein 31.
 
 
    0.704
LOC100185472
Ankyrin repeat domain-containing protein 45-like isoform X1.
   
 
 0.692
Tolloid
Metalloendopeptidase.
 
    
 0.628
H2Y0A0_CIOIN
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
     
 0.592
F6Z781_CIOIN
Calreticulin.
   
  
 0.567
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.