STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XP93_CIOINUncharacterized protein. (379 aa)    
Predicted Functional Partners:
LOC100186678
Serine/arginine repetitive matrix protein 1-like isoform X2.
    
 
 0.991
LOC100176240
N6-adenosine-methyltransferase non-catalytic subunit-like; Belongs to the MT-A70-like family.
   
 0.964
Rsp3
Uncharacterized protein.
    
   0.870
F6XJG1_CIOIN
Uncharacterized protein.
    
 
 0.868
F6YVJ9_CIOIN
VIR_N domain-containing protein.
    
 
 0.868
F6VCT2_CIOIN
Uncharacterized protein.
    
 
 0.831
F6SXP0_CIOIN
Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.750
F6U3S7_CIOIN
OB_NTP_bind domain-containing protein.
    
 
 0.665
F6RIW3_CIOIN
Uncharacterized protein.
    
 
 0.665
F6RYG5_CIOIN
RRM domain-containing protein.
    
 
 0.662
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.