STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XPD5_CIOINUncharacterized protein. (220 aa)    
Predicted Functional Partners:
H2XKA1_CIOIN
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.824
LOC100184779
Matrin-type domain-containing protein.
   
 0.796
H2XW02_CIOIN
Small nuclear ribonucleoprotein Sm D2.
   
 0.790
LOC100178781
Small nuclear ribonucleoprotein-associated protein B-like.
   
 0.774
LOC100178056
Splicing factor 3B subunit 3 isoform X1.
   
 0.753
F7AI93_CIOIN
Uncharacterized protein.
   
 0.737
LOC100178584
Uncharacterized protein.
    
 0.735
F6Y8Y8_CIOIN
Uncharacterized protein.
   
 0.734
LOC100180841
Uncharacterized protein.
   
 0.734
F6Y1N2_CIOIN
PSP domain-containing protein.
   
 0.732
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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