STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XQB5_CIOINCir_N domain-containing protein. (269 aa)    
Predicted Functional Partners:
F6W8G0_CIOIN
WD_REPEATS_REGION domain-containing protein.
    
 0.702
zf(cchc)-12
Zinc finger protein (CCHC)-12.
    
 0.666
F6QBK7_CIOIN
Uncharacterized protein.
    
 0.637
LOC100181332
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.612
F6SBF1_CIOIN
Uncharacterized protein.
   
 0.607
F6RKQ2_CIOIN
Uncharacterized protein.
    
 0.600
F6TYS5_CIOIN
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
 0.581
F6TRN8_CIOIN
Uncharacterized protein.
   
 0.565
F6WFL4_CIOIN
PPIase cyclophilin-type domain-containing protein.
    
 0.557
F6ZIK8_CIOIN
Uncharacterized protein.
    
 0.555
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.