H2XQE2_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2XQE2_CIOIN

Abhydrolase_3 domain-containing protein. (357 aa)

Predicted Functional Partners:

H2XNI5_CIOIN

0.604

LOC100181042

0.595

LOC100185471

0.557

F7AIB9_CIOIN

0.556

LOC100177491

0.534

LOC100176100

0.529

H2XYL3_CIOIN

0.528

F6UBT3_CIOIN

0.511

LOC100186033

0.502

F6VXM0_CIOIN

0.494

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6UBT3_CIOIN	H2XQE2_CIOIN	ENSCINP00000012991	ENSCINP00000031876	Uncharacterized protein; Belongs to the peptidase M16 family.	Abhydrolase_3 domain-containing protein.	0.511
F6UBT3_CIOIN	H2XYL3_CIOIN	ENSCINP00000012991	ENSCINP00000034747	Uncharacterized protein; Belongs to the peptidase M16 family.	Cytochrome c domain-containing protein.	0.999
F6UBT3_CIOIN	LOC100176100	ENSCINP00000012991	ENSCINP00000034697	Uncharacterized protein; Belongs to the peptidase M16 family.	Uncharacterized protein.	0.998
F6UBT3_CIOIN	LOC100177491	ENSCINP00000012991	ENSCINP00000019117	Uncharacterized protein; Belongs to the peptidase M16 family.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
F6UBT3_CIOIN	LOC100181042	ENSCINP00000012991	ENSCINP00000034032	Uncharacterized protein; Belongs to the peptidase M16 family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.961
F6UBT3_CIOIN	LOC100185471	ENSCINP00000012991	ENSCINP00000011600	Uncharacterized protein; Belongs to the peptidase M16 family.	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.	0.995
F6UBT3_CIOIN	LOC100186033	ENSCINP00000012991	ENSCINP00000014838	Uncharacterized protein; Belongs to the peptidase M16 family.	Uncharacterized protein.	0.999
F6VXM0_CIOIN	H2XQE2_CIOIN	ENSCINP00000008255	ENSCINP00000031876	Uncharacterized protein.	Abhydrolase_3 domain-containing protein.	0.494
F7AIB9_CIOIN	H2XQE2_CIOIN	ENSCINP00000029357	ENSCINP00000031876	Uncharacterized protein.	Abhydrolase_3 domain-containing protein.	0.556
H2XNI5_CIOIN	H2XQE2_CIOIN	ENSCINP00000031218	ENSCINP00000031876	Ig-like domain-containing protein.	Abhydrolase_3 domain-containing protein.	0.604
H2XQE2_CIOIN	F6UBT3_CIOIN	ENSCINP00000031876	ENSCINP00000012991	Abhydrolase_3 domain-containing protein.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.511
H2XQE2_CIOIN	F6VXM0_CIOIN	ENSCINP00000031876	ENSCINP00000008255	Abhydrolase_3 domain-containing protein.	Uncharacterized protein.	0.494
H2XQE2_CIOIN	F7AIB9_CIOIN	ENSCINP00000031876	ENSCINP00000029357	Abhydrolase_3 domain-containing protein.	Uncharacterized protein.	0.556
H2XQE2_CIOIN	H2XNI5_CIOIN	ENSCINP00000031876	ENSCINP00000031218	Abhydrolase_3 domain-containing protein.	Ig-like domain-containing protein.	0.604
H2XQE2_CIOIN	H2XYL3_CIOIN	ENSCINP00000031876	ENSCINP00000034747	Abhydrolase_3 domain-containing protein.	Cytochrome c domain-containing protein.	0.528
H2XQE2_CIOIN	LOC100176100	ENSCINP00000031876	ENSCINP00000034697	Abhydrolase_3 domain-containing protein.	Uncharacterized protein.	0.529
H2XQE2_CIOIN	LOC100177491	ENSCINP00000031876	ENSCINP00000019117	Abhydrolase_3 domain-containing protein.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.534
H2XQE2_CIOIN	LOC100181042	ENSCINP00000031876	ENSCINP00000034032	Abhydrolase_3 domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.595
H2XQE2_CIOIN	LOC100185471	ENSCINP00000031876	ENSCINP00000011600	Abhydrolase_3 domain-containing protein.	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.	0.557
H2XQE2_CIOIN	LOC100186033	ENSCINP00000031876	ENSCINP00000014838	Abhydrolase_3 domain-containing protein.	Uncharacterized protein.	0.502