STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100178035Sulfhydryl oxidase. (156 aa)    
Predicted Functional Partners:
LOC100183112
Mitochondrial intermembrane space import and assembly protein 40-A-like isoform X2.
    
 0.968
H2XZW2_CIOIN
zf-Tim10_DDP domain-containing protein.
   
 0.736
LOC100185391
Cytochrome c oxidase copper chaperone.
   
 0.703
H2Y167_CIOIN
Mitochondrial import inner membrane translocase subunit Tim13; Belongs to the small Tim family.
   
 
 0.687
H2XWM7_CIOIN
zf-Tim10_DDP domain-containing protein.
   
 0.678
F6YC82_CIOIN
SARAH domain-containing protein.
      
 0.634
LOC100176837
Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.
   
 0.598
LOC100184986
Cytochrome c, somatic; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
    
 
 0.584
LOC100187058
GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.
   
  
 0.541
H2XQT6_CIOIN
Uncharacterized protein.
      
 0.530
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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