STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XQZ4_CIOINChromo domain-containing protein. (141 aa)    
Predicted Functional Partners:
LOC100178376
Male-specific lethal 1 homolog isoform X1.
    
 0.967
F7A9A0_CIOIN
zf-RING_10 domain-containing protein.
    
 0.962
LOC100183508
MRG/MORF4L-binding protein-like.
   
 0.847
F6PU76_CIOIN
Enhancer of polycomb-like protein.
    
 0.838
LOC100185254
Chromatin modification-related protein MEAF6-like isoform X2.
   
 0.838
LOC100185398
Actin-like protein 6B; Belongs to the actin family.
   
 0.826
H2XZY0_CIOIN
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.792
LOC100177411
RuvB-like helicase; Belongs to the RuvB family.
   
 0.791
LOC104265886
Histone-binding protein RBBP4.
   
 0.785
LOC100183367
RuvB-like helicase; Belongs to the RuvB family.
   
 0.751
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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