STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XR04_CIOINCBFD_NFYB_HMF domain-containing protein. (145 aa)    
Predicted Functional Partners:
LOC100186645
Uncharacterized protein LOC100186645.
   
 0.996
LOC100177214
Uncharacterized protein.
    
 
 0.982
cbf-2
Transcription factor CBF/NF-Y/archaeal histone -2.
   
 
0.868
LOC100178595
Transcriptional adapter.
    
 0.843
F6RU68_CIOIN
N-acetyltransferase domain-containing protein.
    
 0.843
LOC100186846
YEATS domain-containing protein 2.
    
 0.828
F6Z277_CIOIN
Uncharacterized protein.
    
 
 0.820
LOC100182357
MAP3K12-binding inhibitory protein 1.
   
 0.784
F6RG39_CIOIN
SGF29 C-terminal domain-containing protein.
    
 0.721
F6WCC6_CIOIN
Uncharacterized protein.
    
 0.703
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (28%) [HD]