STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XR99_CIOINFHA domain-containing protein. (427 aa)    
Predicted Functional Partners:
LOC100178064
KAT8 regulatory NSL complex subunit 3-like.
   
 0.958
F6YNK9_CIOIN
Uncharacterized protein.
   
 0.947
F6VU73_CIOIN
SET domain-containing protein.
    
 0.930
nfrkb
Uncharacterized protein.
    
 0.923
LOC100183367
RuvB-like helicase; Belongs to the RuvB family.
    
 0.900
F6W6Y6_CIOIN
Uncharacterized protein.
    
 0.890
LOC100186474
Uncharacterized protein LOC100186474 isoform X1.
    
 0.873
LOC100185398
Actin-like protein 6B; Belongs to the actin family.
    
  0.862
LOC100181206
TPR_REGION domain-containing protein.
     
 0.835
F7AZZ9_CIOIN
PEHE domain-containing protein.
    
 0.835
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.