STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XRC6_CIOINUncharacterized protein. (227 aa)    
Predicted Functional Partners:
H2XRY8_CIOIN
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
   
    0.837
LOC100184303
Uncharacterized protein.
   
    0.800
LOC100182572
Bystin-like.
   
  
 0.716
LOC100180912
rRNA-processing protein UTP23 homolog.
   
    0.683
F6T6Y7_CIOIN
RRM domain-containing protein.
   
    0.682
F6W1S6_CIOIN
Uncharacterized protein.
   
    0.681
F6ZRR5_CIOIN
Uncharacterized protein.
   
  
 0.661
H2XW54_CIOIN
NUC153 domain-containing protein.
   
    0.634
LOC100183227
WD_REPEATS_REGION domain-containing protein.
   
  
 0.608
LOC100183682
Uncharacterized protein.
   
    0.595
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.