STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104265697Chromosome transmission fidelity protein 8 homolog. (111 aa)    
Predicted Functional Partners:
H2XZJ6_CIOIN
Uncharacterized protein.
   
 0.997
F6PPP3_CIOIN
AAA domain-containing protein.
   
 0.965
H2Y334_CIOIN
Uncharacterized protein.
   
 0.939
LOC100181635
AAA domain-containing protein.
   
 0.923
LOC100179093
AAA domain-containing protein.
   
 0.919
LOC100184859
Replication factor C subunit 3-like.
   
 0.891
LOC100181422
Replication factor C subunit 2-like.
   
 0.885
F6WUQ7_CIOIN
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
    
 0.807
F6V4K8_CIOIN
WD_REPEATS_REGION domain-containing protein.
   
 
 0.735
F6YH93_CIOIN
Uncharacterized protein.
    
 
 0.730
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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