STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2XRN7_CIOINUncharacterized protein. (562 aa)    
Predicted Functional Partners:
LOC100181511
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.954
F6PW28_CIOIN
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.799
F7ANR5_CIOIN
CPSF_A domain-containing protein.
    
 
 0.784
LOC100183335
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
    
 
 0.773
LOC100175879
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.701
LOC113474870
Proteasome maturation protein-like.
      
 0.642
LOC100182516
RING-box protein 1.
    
 0.633
LOC100176246
Ubiquitin-like domain-containing protein.
    
  0.591
F6ZAD3_CIOIN
Rap-GAP domain-containing protein.
    
 
 0.587
F6R472_CIOIN
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.577
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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